If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ), 'gf_id' => 'HOM05D000638', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000638' ), 'data_identifier' => 'HOM05D000638', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000638', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22040' => 'bna', 'A06p15400' => 'bna', 'A07p43440' => 'bna', 'A08p29910' => 'bna', 'A09p59420' => 'bna', 'A09p59430' => 'bna', 'A09p59440' => 'bna', 'Aa31LG2G20890' => 'aar', 'Aa31LG4G8190' => 'aar', 'Aa31LG7G3960' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.349' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.704' => 'aag', 'Actinidia17041' => 'ach', 'Actinidia25167' => 'ach', 'Actinidia26333' => 'ach', 'Actinidia26334' => 'ach', 'Actinidia26348' => 'ach', 'Actinidia29947' => 'ach', 'Actinidia30250' => 'ach', 'Actinidia30766' => 'ach', 'Actinidia32015' => 'ach', 'Actinidia32016' => 'ach', 'Actinidia38694' => 'ach', 'Actinidia39625' => 'ach', 'Ah.01g007710' => 'amhyb', 'Ah.01g017470' => 'amhyb', 'Ah.05g170090' => 'amhyb', 'Ah.11g041160' => 'amhyb', 'Ah.14g084740' => 'amhyb', 'AL1G31830' => 'aly', 'AL2G38450' => 'aly', 'AL4G39010' => 'aly', 'Aqoxy6G00813' => 'aox', 'Aqoxy6G00814' => 'aox', 'Aqoxy6G01720' => 'aox', 'Aqoxy6G01721' => 'aox', 'Aqoxy6G01722' => 'aox', 'Aqoxy6G01723' => 'aox', 'Aqoxy6G01799' => 'aox', 'Aqoxy7G02461' => 'aox', 'Aqoxy7G04131' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V18ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2E6MRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.338AQV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UGQ34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S2M5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZUL8B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D4TTKC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DCU3FP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KL0YJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM5KAV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NH3SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU0NAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8MNPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNR42Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WG2NS7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZCTZ1D' => 'arhy', 'AT1G19250' => 'ath', 'AT1G78140' => 'ath', 'AT2G41040' => 'ath', 'AT5G45180' => 'ath', 'ATR0082G001' => 'atr', 'ATR0564G335' => 'atr', 'ATR0661G216' => 'atr', 'ATR0661G233' => 'atr', 'ATR0681G206' => 'atr', 'ATR0767G043' => 'atr', 'Atru.chr12.2001' => 'acertr', 'Atru.chr12.2002' => 'acertr', 'Atru.chr12.2003' => 'acertr', 'Atru.chr13.1207' => 'acertr', 'Atru.chr13.1208' => 'acertr', 'Atru.chr5.3505_Atru.chr5.3517_Atru.chr5.3521_Atru.' => 'acertr', 'Atru.chr5.3508' => 'acertr', 'Atru.chr5.3525' => 'acertr', 'Atru.chr7.1755' => 'acertr', 'Atru.chr7.280' => 'acertr', 'AUR62010929' => 'cqu', 'AUR62011241' => 'cqu', 'AUR62012935' => 'cqu', 'AUR62012936' => 'cqu', 'AUR62018898' => 'cqu', 'AUR62018904' => 'cqu', 'AUR62021441' => 'cqu', 'AUR62025299' => 'cqu', 'AUR62027133' => 'cqu', 'AUR62027134' => 'cqu', 'AUR62027744' => 'cqu', 'AUR62028305' => 'cqu', 'AUR62031760' => 'cqu', 'AUR62031762' => 'cqu', 'AUR62031763' => 'cqu', 'AUR62040056' => 'cqu', 'AUR62041462' => 'cqu', 'BcaB03g12923' => 'bca', 'BcaB03g12924' => 'bca', 'BcaB03g14456' => 'bca', 'BcaB03g15982' => 'bca', 'BcaB05g25121' => 'bca', 'BcaB07g31941' => 'bca', 'BcaC02g12876' => 'bca', 'BcaC03g15797' => 'bca', 'BcaC07g38993' => 'bca', 'BcaC07g41264' => 'bca', 'BcaC07g41266' => 'bca', 'BcaC07g41267' => 'bca', 'BcaC08g47389' => 'bca', 'BolC2t09556H' => 'bol', 'BolC5t30468H' => 'bol', 'BolC6t40233H' => 'bol', 'BolC8t49554H' => 'bol', 'BolC8t51829H' => 'bol', 'BraA02t07207Z' => 'bra', 'BraA06t24653Z' => 'bra', 'BraA07t31858Z' => 'bra', 'BraA08t34926Z' => 'bra', 'BraA09t41321Z' => 'bra', 'BraA09t41322Z' => 'bra', 'BraA09t41323Z' => 'bra', 'C02p35430' => 'bna', 'C05p17650' => 'bna', 'C06p52100' => 'bna', 'C08p19330' => 'bna', 'C08p42680' => 'bna', 'C08p42700' => 'bna', 'C08p42720' => 'bna', 'C08p42730' => 'bna', 'CAN.G1235.10' => 'can', 'CAN.G1235.11' => 'can', 'CAN.G1235.12' => 'can', 'CAN.G1235.13' => 'can', 'CAN.G1235.3' => 'can', 'CAN.G1235.4' => 'can', 'CAN.G1235.5' => 'can', 'CAN.G1235.6' => 'can', 'CAN.G1235.7' => 'can', 'CAN.G1235.9' => 'can', 'CAN.G210.8' => 'can', 'CAN.G330.3' => 'can', 'CAN.G761.28' => 'can', 'CAN.G863.1' => 'can', 'CAN.G863.5' => 'can', 'CANSAT11G0855' => 'cansat', 'CANSAT11G2338' => 'cansat', 'CANSAT25G1139' => 'cansat', 'CANSAT25G1971' => 'cansat', 'CANSAT25G2536' => 'cansat', 'CANSAT25G2685' => 'cansat', 'CANSAT25G3713' => 'cansat', 'CANSAT25G3742' => 'cansat', 'CANSAT56G3705' => 'cansat', 'CANSAT56G3960' => 'cansat', 'CARHR019850' => 'chi', 'CARHR071600' => 'chi', 'CARHR136150' => 'chi', 'Carub.0001s1885' => 'cru', 'Carub.0002s2503' => 'cru', 'Carub.0004s2336' => 'cru', 'Carub.0008s0301' => 'cru', 'Ca_02893_v3' => 'car', 'Ca_13144_v3' => 'car', 'Ca_15245_v3' => 'car', 'Ca_21332_v3' => 'car', 'Ca_23923_v3' => 'car', 'Ca_30681_v3' => 'car', 'Ca_30963_v3' => 'car', 'CBR_g147' => 'cbr', 'CBR_g53538' => 'cbr', 'Cc04_g16760' => 'ccan', 'Cc06_g07530' => 'ccan', 'Cc06_g07540' => 'ccan', 'Cc06_g12600' => 'ccan', 'Cc10_g00660' => 'ccan', 'Cc10_g07330' => 'ccan', 'CDE02G4163' => 'cde', 'CDE04G3417' => 'cde', 'CDE05G1237' => 'cde', 'CDE05G2502' => 'cde', 'CDE05G3045' => 'cde', 'CDE06G1143' => 'cde', 'Cfa005331' => 'cfa', 'Cfa005332' => 'cfa', 'Cfa005333' => 'cfa', 'Cfa013626' => 'cfa', 'Cfa017840' => 'cfa', 'Cfa020905' => 'cfa', 'Cfa025228' => 'cfa', 'Cfa026661' => 'cfa', 'Ciclev10001682m.g' => 'ccl', 'Ciclev10003823m.g' => 'ccl', 'Ciclev10008046m.g' => 'ccl', 'Ciclev10008875m.g' => 'ccl', 'Ciclev10010773m.g' => 'ccl', 'Ciclev10028206m.g' => 'ccl', 'CiPaw.03G202000' => 'cil', 'CiPaw.04G140500' => 'cil', 'CiPaw.05G089000' => 'cil', 'CiPaw.05G089200' => 'cil', 'CiPaw.05G089400' => 'cil', 'CiPaw.07G180900' => 'cil', 'CiPaw.15G183600' => 'cil', 'CiPaw.15G183700' => 'cil', 'CiPaw.15G183800' => 'cil', 'ClCG00G000720' => 'cla', 'ClCG00G000790' => 'cla', 'ClCG01G010740' => 'cla', 'ClCG02G009150' => 'cla', 'ClCG02G009160' => 'cla', 'ClCG02G017190' => 'cla', 'ClCG03G014770' => 'cla', 'ClCG04G000420' => 'cla', 'ClCG06G011930' => 'cla', 'ClCG08G009680' => 'cla', 'ClCG11G015300' => 'cla', 'COL.COLO4_05215' => 'col', 'COL.COLO4_16420' => 'col', 'COL.COLO4_17940' => 'col', 'COL.COLO4_17941' => 'col', 'COL.COLO4_17942' => 'col', 'COL.COLO4_21168' => 'col', 'COL.COLO4_21220' => 'col', 'COL.COLO4_24131' => 'col', 'COL.COLO4_24134' => 'col', 'COL.COLO4_24135' => 'col', 'COL.COLO4_24136' => 'col', 'Cpa.g.sc20.191' => 'cpa', 'Cpa.g.sc20.193' => 'cpa', 'Cpa.g.sc20.194' => 'cpa', 'Cpa.g.sc36.123' => 'cpa', 'Cpa.g.sc46.75' => 'cpa', 'Cpa.g.sc82.77' => 'cpa', 'Cre03.g148900' => 'cre', 'Cre03.g168900' => 'cre', 'Cre06.g296050' => 'cre', 'Cre06.g296550' => 'cre', 'Cre06.g298550' => 'cre', 'Cre13.g603176' => 'cre', 'Cre16.g652750' => 'cre', 'Cre17.g723050' => 'cre', 'Cre17.g731700' => 'cre', 'Cre17.g743797' => 'cre', 'CsaV3_1G028400' => 'csa', 'CsaV3_1G041380' => 'csa', 'CsaV3_1G041390' => 'csa', 'CsaV3_2G003590' => 'csa', 'CsaV3_3G048720' => 'csa', 'CsaV3_6G012240' => 'csa', 'CsaV3_6G012480' => 'csa', 'CsaV3_6G012670' => 'csa', 'CsaV3_6G013100' => 'csa', 'CsaV3_6G031810' => 'csa', 'CSS0003164' => 'camsi', 'CSS0005305' => 'camsi', 'CSS0012245' => 'camsi', 'CSS0016742' => 'camsi', 'CSS0018248' => 'camsi', 'CSS0020438' => 'camsi', 'CSS0021081' => 'camsi', 'CSS0028372' => 'camsi', 'CSS0030262' => 'camsi', 'CSS0031310' => 'camsi', 'CSS0037435' => 'camsi', 'CSS0049367' => 'camsi', 'CSS0050388' => 'camsi', 'DCAR_008724' => 'dca', 'DCAR_008873' => 'dca', 'DCAR_011923' => 'dca', 'DCAR_015670' => 'dca', 'DCAR_015671' => 'dca', 'DCAR_024772' => 'dca', 'DCAR_025223' => 'dca', 'Dinv25517' => 'din', 'Dinv31940' => 'din', 'Dinv41436' => 'din', 'Dinv41846' => 'din', 'Dinv41886' => 'din', 'Dinv42425' => 'din', 'Dinv42923' => 'din', 'Dinv42924' => 'din', 'Dinv43176' => 'din', 'Dinv43177' => 'din', 'Dinv44764' => 'din', 'Duzib041G0281' => 'dzi', 'Duzib093G1154' => 'dzi', 'Duzib093G1839' => 'dzi', 'Duzib150G1300' => 'dzi', 'Duzib150G1403' => 'dzi', 'Duzib168G0152' => 'dzi', 'Duzib168G1475' => 'dzi', 'Duzib168G1784' => 'dzi', 'Duzib168G1978' => 'dzi', 'Duzib187G1681' => 'dzi', 'Duzib248G0504' => 'dzi', 'ECA232G4306' => 'eca', 'ECA232G4891' => 'eca', 'ECA238G0473' => 'eca', 'ECA238G1571' => 'eca', 'ECA238G4799' => 'eca', 'ECA240G1203' => 'eca', 'ECA240G1899' => 'eca', 'ECA246G1377' => 'eca', 'ECA246G4665' => 'eca', 'EL10Ac1g01233' => 'bvu', 'EL10Ac3g06979' => 'bvu', 'EL10Ac8g18728' => 'bvu', 'EL10Ac8g18803' => 'bvu', 'EL10Ac8g18995' => 'bvu', 'EL10Ac9g21261' => 'bvu', 'EL10Ac9g21262' => 'bvu', 'Eucgr.C00444' => 'egr', 'Eucgr.C00445' => 'egr', 'Eucgr.C00446' => 'egr', 'Eucgr.C00448' => 'egr', 'Eucgr.C00449' => 'egr', 'Eucgr.C00748' => 'egr', 'Eucgr.C00775' => 'egr', 'Eucgr.C03288' => 'egr', 'Eucgr.E02617' => 'egr', 'Eucgr.F00305' => 'egr', 'Eucgr.F00306' => 'egr', 'Eucgr.F00926' => 'egr', 'Eucgr.F01759' => 'egr', 'Eucgr.F01767' => 'egr', 'Eucgr.F02436' => 'egr', 'Eucgr.G01840' => 'egr', 'Eucgr.G01843' => 'egr', 'Eucgr.G01845' => 'egr', 'Eucgr.L01041' => 'egr', 'Eucgr.L01042' => 'egr', 'Eucgr.L01043' => 'egr', 'Eucgr.L01044' => 'egr', 'Eucgr.L01045' => 'egr', 'Eucgr.L03260' => 'egr', 'Eucgr.L03668' => 'egr', 'FAN04G0615' => 'fan', 'FAN08G1038' => 'fan', 'FAN08G3575' => 'fan', 'FAN13G2648' => 'fan', 'FAN15G0679' => 'fan', 'FAN18G3091' => 'fan', 'FAN19G0179' => 'fan', 'FAN19G1194' => 'fan', 'FAN20G2515' => 'fan', 'FAN23G1820' => 'fan', 'FAN23G2873' => 'fan', 'FAN24G1569' => 'fan', 'FAN24G2340' => 'fan', 'FAN26G0016' => 'fan', 'FAN26G0672' => 'fan', 'FAN26G2516' => 'fan', 'FAN27G0534' => 'fan', 'FAN27G1700' => 'fan', 'FAN27G2278' => 'fan', 'FAN28G2272' => 'fan', 'FAN28G2647' => 'fan', 'FAN28G2986' => 'fan', 'FvH4_1g01890' => 'fve', 'FvH4_1g01891' => 'fve', 'FvH4_1g09240' => 'fve', 'FvH4_2g16410' => 'fve', 'FvH4_2g16420' => 'fve', 'FvH4_2g16430' => 'fve', 'FvH4_2g16450' => 'fve', 'FvH4_2g37000' => 'fve', 'FvH4_5g37670' => 'fve', 'Glyma.04G103100' => 'gma', 'Glyma.06G104301' => 'gma', 'Glyma.09G093800' => 'gma', 'Glyma.09G093900' => 'gma', 'Glyma.09G094000' => 'gma', 'Glyma.13G113100' => 'gma', 'Glyma.15G181900' => 'gma', 'Glyma.15G200600' => 'gma', 'Glyma.15G200700' => 'gma', 'Glyma.15G200800' => 'gma', 'Glyma.15G201100' => 'gma', 'Glyma.17G046600' => 'gma', 'Gohir.A01G173900' => 'ghi', 'Gohir.A01G174100' => 'ghi', 'Gohir.A05G012300' => 'ghi', 'Gohir.A05G035450' => 'ghi', 'Gohir.A05G035500' => 'ghi', 'Gohir.A05G267400' => 'ghi', 'Gohir.A06G080950' => 'ghi', 'Gohir.A08G237700' => 'ghi', 'Gohir.A09G014800' => 'ghi', 'Gohir.D01G114675' => 'ghi', 'Gohir.D01G165300' => 'ghi', 'Gohir.D04G170200' => 'ghi', 'Gohir.D05G013400' => 'ghi', 'Gohir.D05G037000' => 'ghi', 'Gohir.D05G269100' => 'ghi', 'Gohir.D06G080600' => 'ghi', 'Gohir.D08G258200' => 'ghi', 'Gohir.D09G013400' => 'ghi', 'Gorai.002G140100' => 'gra', 'Gorai.002G205700' => 'gra', 'Gorai.004G275300' => 'gra', 'Gorai.006G015400' => 'gra', 'Gorai.009G013400' => 'gra', 'Gorai.009G037500' => 'gra', 'Gorai.009G281700' => 'gra', 'Gorai.010G094000' => 'gra', 'Gorai.012G158500' => 'gra', 'GSVIVG01009017001' => 'vvi', 'GSVIVG01012870001' => 'vvi', 'GSVIVG01012871001' => 'vvi', 'GSVIVG01013359001' => 'vvi', 'GSVIVG01015028001' => 'vvi', 'GSVIVG01023939001' => 'vvi', 'GSVIVG01023941001' => 'vvi', 'GSVIVG01023942001' => 'vvi', 'GSVIVG01023944001' => 'vvi', 'GSVIVG01023946001' => 'vvi', 'GSVIVG01023948001' => 'vvi', 'GSVIVG01035505001' => 'vvi', 'HanXRQChr03g0060041' => 'han', 'HanXRQChr03g0063581' => 'han', 'HanXRQChr05g0140431' => 'han', 'HanXRQChr05g0147391' => 'han', 'HanXRQChr06g0173761' => 'han', 'HanXRQChr09g0246321' => 'han', 'HanXRQChr12g0380271' => 'han', 'HanXRQChr15g0476481' => 'han', 'HanXRQChr15g0491871' => 'han', 'HanXRQChr17g0543731' => 'han', 'HanXRQChr17g0544051' => 'han', 'HanXRQChr17g0545591' => 'han', 'HanXRQChr17g0545611' => 'han', 'Haze_02049' => 'cav', 'Haze_18368' => 'cav', 'Haze_19334' => 'cav', 'Haze_19336' => 'cav', 'Haze_22254' => 'cav', 'Haze_26056' => 'cav', 'Hma1.2p1_0271F.1_g109000' => 'hma', 'Hma1.2p1_0271F.1_g109005' => 'hma', 'Hma1.2p1_0271F.1_g109020' => 'hma', 'Hma1.2p1_1100F.1_g257000' => 'hma', 'Hma1.2p1_1100F.1_g257025' => 'hma', 'HPP92_000483' => 'vpl', 'HPP92_004171' => 'vpl', 'HPP92_004288' => 'vpl', 'HPP92_004292' => 'vpl', 'HPP92_004949' => 'vpl', 'HPP92_020294' => 'vpl', 'HPP92_022697' => 'vpl', 'HPP92_022699' => 'vpl', 'HPP92_022700' => 'vpl', 'HPP92_022701' => 'vpl', 'HPP92_022702' => 'vpl', 'HPP92_025946' => 'vpl', 'HPP92_025947' => 'vpl', 'Hund05440' => 'sun', 'Hund21600' => 'sun', 'Hund26956' => 'sun', 'Hund26957' => 'sun', 'Lalb_Chr07g0195701' => 'lal', 'Lalb_Chr08g0242001' => 'lal', 'Lalb_Chr12g0210641' => 'lal', 'Lalb_Chr13g0299271' => 'lal', 'Lalb_Chr13g0301281' => 'lal', 'Lalb_Chr23g0270611' => 'lal', 'Lalb_Chr23g0275851' => 'lal', 'Lj1g0014163' => 'lja', 'Lj1g0014212' => 'lja', 'Lj4A11T68' => 'lonja', 'Lj4g0014539' => 'lja', 'Lj6g0015143' => 'lja', 'Lj6g0027799' => 'lja', 'Lj7A449T41' => 'lonja', 'Lj7C691T1' => 'lonja', 'Lj9A405T68' => 'lonja', 'Lsat_1_v5_gn_3_47000' => 'lsa', 'Lsat_1_v5_gn_3_48840' => 'lsa', 'Lsat_1_v5_gn_3_48860' => 'lsa', 'Lsat_1_v5_gn_4_70920' => 'lsa', 'Lsat_1_v5_gn_5_139181' => 'lsa', 'Lsat_1_v5_gn_7_35400' => 'lsa', 'Lsat_1_v5_gn_7_35420' => 'lsa', 'Lsat_1_v5_gn_7_46160' => 'lsa', 'Lsat_1_v5_gn_9_41341' => 'lsa', 'Manes.04G064632' => 'mes', 'Manes.05G134200' => 'mes', 'Manes.06G043300' => 'mes', 'Manes.14G120400' => 'mes', 'Manes.14G120500' => 'mes', 'Manes.16G087700' => 'mes', 'Manes.16G091800' => 'mes', 'Manes.18G068300' => 'mes', 'Mapoly0015s0204' => 'mpo', 'MBI05_g15588_MAGBIO' => 'mbi', 'MBI08_g17703_MAGBIO' => 'mbi', 'MBI08_g17707_MAGBIO' => 'mbi', 'MBI08_g17708_MAGBIO' => 'mbi', 'MBI08_g25194_MAGBIO' => 'mbi', 'MBI08_g41520_MAGBIO' => 'mbi', 'MBI08_g42684_MAGBIO' => 'mbi', 'MBI13_g01663_MAGBIO' => 'mbi', 'MBI15_g14878_MAGBIO' => 'mbi', 'MBI19_g40606_MAGBIO' => 'mbi', 'MCO05G452' => 'mco', 'MCO10G380' => 'mco', 'MCO11G050' => 'mco', 'MCO16G218' => 'mco', 'MD00G1083300' => 'mdo', 'MD00G1083500' => 'mdo', 'MD00G1083600' => 'mdo', 'MD01G1022800' => 'mdo', 'MD02G1016900' => 'mdo', 'MD02G1099600' => 'mdo', 'MD05G1133000' => 'mdo', 'MD05G1202100' => 'mdo', 'MD08G1046700' => 'mdo', 'MD08G1046800' => 'mdo', 'MD08G1181500' => 'mdo', 'MD08G1181700' => 'mdo', 'MD15G1047200' => 'mdo', 'MD15G1047300' => 'mdo', 'MD15G1161300' => 'mdo', 'MD15G1161400' => 'mdo', 'MD15G1222400' => 'mdo', 'MD15G1366900' => 'mdo', 'MD16G1203500' => 'mdo', 'MD16G1203700' => 'mdo', 'MD16G1203800' => 'mdo', 'MD16G1203900' => 'mdo', 'Medtr1088s0010' => 'mtr', 'Medtr1308s0010' => 'mtr', 'Medtr1372s0010' => 'mtr', 'Medtr2g020630' => 'mtr', 'Medtr2g043850' => 'mtr', 'Medtr2g044120' => 'mtr', 'Medtr2g044140' => 'mtr', 'Medtr2g450310' => 'mtr', 'Medtr2g450510' => 'mtr', 'Medtr2g450530' => 'mtr', 'Medtr3g074250' => 'mtr', 'Medtr4g124795' => 'mtr', 'Medtr4g124800' => 'mtr', 'Medtr6g037690' => 'mtr', 'MELO3C003448.2' => 'cme', 'MELO3C003953.2' => 'cme', 'MELO3C004437.2' => 'cme', 'MELO3C010272.2' => 'cme', 'MELO3C013512.2' => 'cme', 'MELO3C013562.2' => 'cme', 'MELO3C013590.2' => 'cme', 'MELO3C015551.2' => 'cme', 'MELO3C026561.2' => 'cme', 'MELO3C032554.2' => 'cme', 'MELO3C033123.2' => 'cme', 'MELO3C034645.2' => 'cme', 'MELO3C034758.2' => 'cme', 'MELO3C035023.2' => 'cme', 'MELO3C035652.2' => 'cme', 'Migut.B00017' => 'egut', 'Migut.C00384' => 'egut', 'Migut.J00893' => 'egut', 'Migut.K00389' => 'egut', 'Migut.K00390' => 'egut', 'Migut.K00391' => 'egut', 'Migut.N02903' => 'egut', 'MSTRG.10642' => 'ama', 'MSTRG.10646' => 'ama', 'MSTRG.10647' => 'ama', 'MSTRG.24464' => 'ama', 'MSTRG.26322' => 'ama', 'Nitab4.5_0000337g0270' => 'nta', 'Nitab4.5_0000783g0240' => 'nta', 'Nitab4.5_0000783g0260' => 'nta', 'Nitab4.5_0001244g0160' => 'nta', 'Nitab4.5_0001244g0170' => 'nta', 'Nitab4.5_0001699g0050' => 'nta', 'Nitab4.5_0001699g0080' => 'nta', 'Nitab4.5_0001961g0080' => 'nta', 'Nitab4.5_0002710g0030' => 'nta', 'Nitab4.5_0006146g0010' => 'nta', 'Nitab4.5_0006146g0020' => 'nta', 'Nitab4.5_0006146g0030' => 'nta', 'Nitab4.5_0006796g0010' => 'nta', 'Nitab4.5_0006796g0020' => 'nta', 'Nitab4.5_0006796g0040' => 'nta', 'Nitab4.5_0007259g0010' => 'nta', 'Nitab4.5_0007259g0020' => 'nta', 'Nitab4.5_0007540g0050' => 'nta', 'Nitab4.5_0011212g0020' => 'nta', 'Nitab4.5_0013459g0010' => 'nta', 'Nitab4.5_0015477g0010' => 'nta', 'Nitab4.5_0016122g0010' => 'nta', 'Nitab4.5_0018637g0010' => 'nta', 'Nn001s41354' => 'nnu', 'Nn1g05330' => 'nnu', 'Nn1g06932' => 'nnu', 'Nn6g31735' => 'nnu', 'Nn6g31736' => 'nnu', 'Nn6g35651' => 'nnu', 'Nn8g38552' => 'nnu', 'Oeu006124.1' => 'oeu', 'Oeu028012.2' => 'oeu', 'Oeu028118.1' => 'oeu', 'Oeu057254.1' => 'oeu', 'Os03g0182000' => 'osa', 'Os04g0223500' => 'osa', 'Os04g0223901' => 'osa', 'Os06g0203200' => 'osa', 'Os06g0203400' => 'osa', 'Os06g0646000' => 'osa', 'Os08g0411200' => 'osa', 'Os09g0548400' => 'osa', 'Os09g0548700' => 'osa', 'Os09g0549300' => 'osa', 'Peaxi162Scf00088g00021' => 'pax', 'Peaxi162Scf00088g00214' => 'pax', 'Peaxi162Scf00160g00511' => 'pax', 'Peaxi162Scf00160g00629' => 'pax', 'Peaxi162Scf00191g01019' => 'pax', 'Peaxi162Scf00362g00241' => 'pax', 'Peaxi162Scf00362g00255' => 'pax', 'Peaxi162Scf00362g00346' => 'pax', 'Peaxi162Scf00400g00006' => 'pax', 'PGR042G1422' => 'pgr', 'PGR042G1858' => 'pgr', 'PGR042G2579' => 'pgr', 'PGR083G2077' => 'pgr', 'PGR142G0449' => 'pgr', 'PGR142G0840' => 'pgr', 'PGR142G1256' => 'pgr', 'PGR142G1687' => 'pgr', 'PGR142G1827' => 'pgr', 'PGR142G1891' => 'pgr', 'PGR142G2652' => 'pgr', 'PGR142G3528' => 'pgr', 'PGR142G4314' => 'pgr', 'PGSC0003DMG400013577' => 'stu', 'PGSC0003DMG400014673' => 'stu', 'PGSC0003DMG400018659' => 'stu', 'PGSC0003DMG400018660' => 'stu', 'PGSC0003DMG400030730' => 'stu', 'PGSC0003DMG401030729' => 'stu', 'PGSC0003DMG402030729' => 'stu', 'Phvul.003G128133' => 'pvu', 'Phvul.009G030200' => 'pvu', 'Phvul.009G210332' => 'pvu', 'Phvul.009G210448' => 'pvu', 'Phvul.009G210564' => 'pvu', 'Potri.001G335900' => 'ptr', 'Potri.002G095100' => 'ptr', 'Potri.005G165700' => 'ptr', 'Potri.005G250600' => 'ptr', 'Potri.006G060200' => 'ptr', 'Potri.006G060300' => 'ptr', 'Potri.006G060400' => 'ptr', 'Potri.006G137600' => 'ptr', 'Potri.009G143500' => 'ptr', 'Potri.018G115800' => 'ptr', 'Potri.018G120000' => 'ptr', 'Pp3c10_2630' => 'ppa', 'PRCOL_00002909' => 'pco', 'PRCOL_00002952' => 'pco', 'Prupe.1G401400' => 'ppe', 'Prupe.1G514800' => 'ppe', 'Prupe.1G514900' => 'ppe', 'Prupe.7G193500' => 'ppe', 'Prupe.7G256500' => 'ppe', 'Prupe.8G177000' => 'ppe', 'Prupe.8G177100' => 'ppe', 'Psat0s1968g0080' => 'psa', 'Psat0s1968g0160' => 'psa', 'Psat0s1968g0200' => 'psa', 'Psat1g021600' => 'psa', 'Psat1g138800' => 'psa', 'Psat1g138840' => 'psa', 'Psat4g018680' => 'psa', 'Psat5g137640' => 'psa', 'PSO210G0450' => 'pso', 'PSO210G1073' => 'pso', 'PSO210G5386' => 'pso', 'PSO223G0017' => 'pso', 'PSO386G0234' => 'pso', 'PSO447G0278' => 'pso', 'PSO541G5581' => 'pso', 'PSO541G6097' => 'pso', 'PSO675G2184' => 'pso', 'PSO675G4684' => 'pso', 'PSO675G7629' => 'pso', 'PSO832G3658' => 'pso', 'QL02p014072' => 'qlo', 'QL02p091016' => 'qlo', 'QL02p091028' => 'qlo', 'QL02p091045' => 'qlo', 'QL11p002261' => 'qlo', 'QL11p002282' => 'qlo', 'QL11p002488' => 'qlo', 'QL11p054171' => 'qlo', 'QL11p054203' => 'qlo', 'QL11p054218' => 'qlo', 'QL11p054225' => 'qlo', 'QL11p054492' => 'qlo', 'QL11p054519' => 'qlo', 'QL12p036539' => 'qlo', 'QL12p036546' => 'qlo', 'RcHm_v2.0_Chr2g0086891' => 'rch', 'RcHm_v2.0_Chr2g0086901' => 'rch', 'RcHm_v2.0_Chr2g0095771' => 'rch', 'RcHm_v2.0_Chr6g0280211' => 'rch', 'RcHm_v2.0_Chr6g0280221' => 'rch', 'RcHm_v2.0_Chr6g0280281' => 'rch', 'RcHm_v2.0_Chr6g0280291' => 'rch', 'RcHm_v2.0_Chr6g0280311' => 'rch', 'RcHm_v2.0_Chr6g0280341' => 'rch', 'RcHm_v2.0_Chr6g0304751' => 'rch', 'RcHm_v2.0_Chr7g0239331' => 'rch', 'Rhsim03G0226000' => 'rsi', 'Rhsim03G0254800' => 'rsi', 'Rhsim03G0254900' => 'rsi', 'Rhsim05G0003500' => 'rsi', 'Rhsim05G0048100' => 'rsi', 'Rhsim05G0048200' => 'rsi', 'Rhsim05G0048300' => 'rsi', 'Rhsim05G0048400' => 'rsi', 'Rhsim06G0083200' => 'rsi', 'Rhsim11G0117200' => 'rsi', 'RhsimUnG0142400' => 'rsi', 'RhsimUnG0142500' => 'rsi', 'Sabra02G0075100' => 'sbr', 'Sabra05G0125100' => 'sbr', 'Sabra06G0043400' => 'sbr', 'Sabra06G0107700' => 'sbr', 'Sabra09G0111300' => 'sbr', 'Sabra16G0217000' => 'sbr', 'Sabra18G0098200' => 'sbr', 'Sabra18G0100200' => 'sbr', 'SalBow1G0322' => 'sbo', 'SalBow1G0929' => 'sbo', 'SalBow1G1601' => 'sbo', 'SalBow1G5431' => 'sbo', 'SalBow1G5746' => 'sbo', 'SalBow5G3536' => 'sbo', 'SalBow6G1940' => 'sbo', 'SalBow6G2165' => 'sbo', 'SalBow6G4762' => 'sbo', 'SalBow7G0379' => 'sbo', 'Sc08g0005880' => 'sci', 'Sc08g0009110' => 'sci', 'Sc19g0002310' => 'sci', 'Sc26g0000060' => 'sci', 'Sed0000183' => 'sed', 'Sed0004495' => 'sed', 'Sed0004691' => 'sed', 'Sed0006573' => 'sed', 'Sed0008480' => 'sed', 'Sed0008674' => 'sed', 'Sed0011218' => 'sed', 'Sed0011606' => 'sed', 'Sed0012768' => 'sed', 'Sed0023193' => 'sed', 'Sed0028217' => 'sed', 'SEGI_07908' => 'sgi', 'SEGI_10427' => 'sgi', 'SEGI_11391' => 'sgi', 'SEGI_11861' => 'sgi', 'SEGI_16986' => 'sgi', 'SEGI_19619' => 'sgi', 'SEGI_29544' => 'sgi', 'SGA_v2.0_scaffold183G39871' => 'sas', 'SGA_v2.0_scaffold183G39875' => 'sas', 'SGA_v2.0_scaffold222G42763' => 'sas', 'SGA_v2.0_scaffold236G43726' => 'sas', 'SGA_v2.0_scaffold281G46913' => 'sas', 'SGA_v2.0_scaffold28G11923' => 'sas', 'SGA_v2.0_scaffold82G26237' => 'sas', 'SMO119G0244' => 'smo', 'SMO177G0009' => 'smo', 'SMO304G0089' => 'smo', 'SMO356G0202' => 'smo', 'SMO367G0523' => 'smo', 'Solyc01g033995.1' => 'sly', 'Solyc01g112100.3' => 'sly', 'Solyc01g112105.1' => 'sly', 'Solyc01g112120.4' => 'sly', 'Solyc01g112130.4' => 'sly', 'Solyc01g112140.4' => 'sly', 'Solyc07g007290.1' => 'sly', 'Solyc07g007300.3' => 'sly', 'Solyc07g007310.3' => 'sly', 'Solyc07g042430.1' => 'sly', 'Sopen01g054150' => 'spe', 'Sopen01g054160' => 'spe', 'Sopen01g054170' => 'spe', 'Sopen01g054180' => 'spe', 'Sopen01g054190' => 'spe', 'Sopen07g003350' => 'spe', 'Sopen07g003360' => 'spe', 'Sopen07g003370' => 'spe', 'Sopen07g022060' => 'spe', 'Sp1g17160' => 'spa', 'Sp4g23350' => 'spa', 'TAR381G1557' => 'tar', 'TAR383G0235' => 'tar', 'TAR624G1320' => 'tar', 'TAR625G0085' => 'tar', 'TAR625G0912' => 'tar', 'TAR625G1238' => 'tar', 'TAR626G0156' => 'tar', 'TAR629G1695' => 'tar', 'THA.LOC104808942' => 'tha', 'THA.LOC104809046' => 'tha', 'THA.LOC104809711' => 'tha', 'THA.LOC104809712' => 'tha', 'THA.LOC104825181' => 'tha', 'Thecc.02G046000' => 'tca', 'Thecc.02G046100' => 'tca', 'Thecc.02G046200' => 'tca', 'Thecc.02G046300' => 'tca', 'Thecc.02G046400' => 'tca', 'Thecc.02G046500' => 'tca', 'Thecc.08G108500' => 'tca', 'Thecc.09G066300' => 'tca', 'Thecc.09G071500' => 'tca', 'Thecc.09G139300' => 'tca', 'Thecc.09G139400' => 'tca', 'Thhalv10007357m.g' => 'esa', 'Thhalv10016844m.g' => 'esa', 'Thhalv10018789m.g' => 'esa', 'TPR.G12572' => 'tpr', 'TPR.G15363' => 'tpr', 'TPR.G189' => 'tpr', 'TPR.G20466' => 'tpr', 'TPR.G22765' => 'tpr', 'TPR.G24675' => 'tpr', 'TPR.G26577' => 'tpr', 'TPR.G30133' => 'tpr', 'TPR.G31383' => 'tpr', 'TPR.G31740' => 'tpr', 'TWI31G0454' => 'twi', 'TWI32G0098' => 'twi', 'TWI34G0140' => 'twi', 'TWI34G0171' => 'twi', 'TWI34G0598' => 'twi', 'TWI34G0881' => 'twi', 'TWI34G0998' => 'twi', 'TWI34G1006' => 'twi', 'TWI34G1507' => 'twi', 'TWI34G1664' => 'twi', 'TWI63G0775' => 'twi', 'TWI63G0899' => 'twi', 'TWI63G1066' => 'twi', 'TWI63G1193' => 'twi', 'TWI75G0945' => 'twi', 'TWI79G1667' => 'twi', 'unitig_46.g18267' => 'ugi', 'unitig_46.g18268' => 'ugi', 'unitig_46.g18269' => 'ugi', 'unitig_46.g18271' => 'ugi', 'unitig_49.g30739' => 'ugi', 'unitig_50.g33286' => 'ugi', 'unitig_50.g33287' => 'ugi', 'unitig_50.g33288' => 'ugi', 'unitig_578.g16202' => 'ugi', 'unitig_744.g24094' => 'ugi', 'unitig_746.g26541' => 'ugi', 'vmacro06104' => 'vma', 'vmacro17089' => 'vma', 'vmacro17090' => 'vma', 'vmacro17091' => 'vma', 'vmacro17092' => 'vma', 'vmacro17291' => 'vma', 'vmacro17292' => 'vma', 'vmacro21281' => 'vma', 'vmacro21282' => 'vma', 'vmacro23268' => 'vma', 'VMungo1215G0195' => 'vmu', 'VMungo1215G2492' => 'vmu', 'VMungo1309G0579' => 'vmu', 'VMungo1309G0674' => 'vmu', 'VMungo1309G0735' => 'vmu', 'VMungo1309G1777' => 'vmu', 'VMungo1309G2745' => 'vmu', 'Zm00001eb006050' => 'zma', 'Zm00001eb042280' => 'zma', 'Zm00001eb088280' => 'zma', 'Zm00001eb088290' => 'zma', 'Zm00001eb167020' => 'zma', 'Zm00001eb179100' => 'zma', 'Zm00001eb275150' => 'zma', 'Zm00001eb280550' => 'zma', 'Zm00001eb320960' => 'zma', 'Zm00001eb320970' => 'zma', 'Zm00001eb401730' => 'zma' ) $gf_id = 'HOM05D000638' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000638' ) $data_identifier = 'HOM05D000638' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 9, 'arhy' => (int) 16, 'ath' => (int) 4, 'atr' => (int) 6, 'acertr' => (int) 10, 'cqu' => (int) 17, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 7, 'can' => (int) 15, 'cansat' => (int) 10, 'chi' => (int) 3, 'cru' => (int) 4, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 11, 'col' => (int) 11, 'cpa' => (int) 6, 'cre' => (int) 10, 'csa' => (int) 10, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 7, 'egr' => (int) 25, 'fan' => (int) 22, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 12, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 13, 'sun' => (int) 4, 'lal' => (int) 7, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 9, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 10, 'mco' => (int) 4, 'mdo' => (int) 22, 'mtr' => (int) 14, 'cme' => (int) 15, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 23, 'nnu' => (int) 7, 'oeu' => (int) 4, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 13, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 1, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 15, 'rch' => (int) 11, 'rsi' => (int) 12, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 7, 'sas' => (int) 7, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 2, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 11, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 16, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1